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Structure of the PL6 family chondroitinase B from pseudopedobacter saltans, PEDSA3807

Analyse Structure of the PL6 family chondroitinase B from pseudopedobacter saltans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7O78
Type: protein
Length: 983 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polysaccharide lyase from pseudopedobacter saltans, PEDSA3807
UniProt: F0S763
Pockets: 9 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 12% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Polysaccharide lyase from pseudopedobacter saltans, PEDSA3807	protein	491	12% helix, 31% strand	F0S763
B	Polysaccharide lyase from pseudopedobacter saltans, PEDSA3807	protein	492	12% helix, 31% strand	F0S763

Pockets

9 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	434	0.72	0.82	54	empty
2	485	0.60	0.74	47	empty
3	139	0.45	0.77	20	empty
4	121	0.40	0.75	24	empty
5	115	0.39	0.75	19	empty

Interfaces

1 interface between chains.

A–B · 847 Å² buried · 14 hydrogen bonds · protein-protein

Compared structures

7O78 · Structure of the PL6 family chondroitinase B from Pseudopedobacter saltans, Pedsa3807 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F0S763
Elsewhere: RCSB PDB 7O78 · PDBe 7O78 · UniProt F0S763

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