Research workbench
Structure of the PL6 family alginate lyase PATL3640 from pseudoalteromonas atlantica T6C
Analyse Structure of the PL6 family alginate lyase PATL3640 from pseudoalteromonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O77
- Type
- protein
- Length
- 720 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- POLY(BETA-D-mannuronate) lyase
- EC
- 4.2.2.3
- UniProt
- Q15PP6
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 4% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | POLY(BETA-D-mannuronate) lyase (EC 4.2.2.3) | protein | 720 | 4% helix, 45% strand | Q15PP6 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 398 | 0.57 | 0.74 | 41 | empty |
| 2 | 137 | 0.49 | 0.79 | 17 | empty |
| 3 | 180 | 0.43 | 0.74 | 28 | GOL |
Compared structures
- 7O77 · Structure of the PL6 family alginate lyase Patl3640 from Pseudoalteromonas atlantica T6c · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15PP6
- Elsewhere: RCSB PDB 7O77 · PDBe 7O77 · UniProt Q15PP6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.