Research workbench
Structure of the borneol dehydrogenase 2 of salvia officinalis
Analyse Structure of the borneol dehydrogenase 2 of salvia officinalis in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O6P
- Type
- protein
- Length
- 1,022 residues
- Chains
- 4
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Borneol dehydrogenase
- Pockets
- 16 · best druggability 0.87
Structure
electron microscopy · 4 distinct chains · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Borneol dehydrogenase | protein | 256 | 47% helix, 16% strand | — |
| B | Borneol dehydrogenase | protein | 255 | 47% helix, 16% strand | — |
| C | Borneol dehydrogenase | protein | 254 | 48% helix, 16% strand | — |
| D | Borneol dehydrogenase | protein | 257 | 47% helix, 16% strand | — |
Pockets
16 pockets found on a 1 Å grid, 9 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1060 | 0.87 | 0.88 | 53 | empty |
| 2 | 473 | 0.62 | 0.76 | 46 | empty |
| 3 | 442 | 0.61 | 0.76 | 51 | empty |
| 4 | 432 | 0.61 | 0.76 | 50 | empty |
| 5 | 410 | 0.61 | 0.76 | 44 | empty |
Interfaces
6 interfaces between chains.
- C–D · 2061 Ų buried · 29 hydrogen bonds · protein-protein
- A–B · 2052 Ų buried · 31 hydrogen bonds · protein-protein
- A–C · 1694 Ų buried · 24 hydrogen bonds · protein-protein
- B–D · 1688 Ų buried · 25 hydrogen bonds · protein-protein
- A–D · 1034 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 7O6P · Structure of the borneol dehydrogenase 2 of Salvia officinalis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7O6P · PDBe 7O6P
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