Research workbench
Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity
Analyse Structural basis for VIPP1 oligomerization and maintenance of thylakoid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O40
- Type
- protein
- Length
- 1,286 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein SLL0617
- UniProt
- Q55707
- Ligands
- ADP
Structure
electron microscopy · 2 distinct chains · 91% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C, E, F, B, D | Protein SLL0617 | protein | 215 | 92% helix, 0% strand | Q55707 |
| A | Protein SLL0617 | protein | 211 | 90% helix, 0% strand | Q55707 |
Ligands and binding sites
- ADP · Adenosine-5'-diphosphate · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
9 interfaces between chains.
- E–F · 602 Ų buried · 8 hydrogen bonds · protein-protein
- A–B · 589 Ų buried · 4 hydrogen bonds · protein-protein
- C–D · 569 Ų buried · 5 hydrogen bonds · protein-protein
- E–D · 543 Ų buried · 6 hydrogen bonds · protein-protein
- C–B · 505 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7O40 · Structural basis for VIPP1 oligomerization and maintenance of thylakoid membrane integrity · the same entry in another collection · chain D against D, TM-score 1.00
- Q55707 · AlphaFold monomer V2.0 prediction for protein SLL0617 (Q55707) · a predicted model of the same protein · chain C against A, TM-score 0.73
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q55707
- Elsewhere: RCSB PDB 7O40 · PDBe 7O40 · UniProt Q55707
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