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Crystal structure of B. subtilis ugpase yngb
Analyse Crystal structure of B. subtilis ugpase yngb in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7O2N
- Type
- protein
- Length
- 580 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable UTP--glucose-1-phosphate uridylyltransferase yngb
- EC
- 2.7.7.9
- UniProt
- O31822
- Pockets
- 7 · best druggability 0.65
Structure
x-ray diffraction · 2 distinct chains · 42% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable UTP--glucose-1-phosphate uridylyltransferase yngb (EC 2.7.7.9) | protein | 291 | 44% helix, 24% strand | O31822 |
| B | Probable UTP--glucose-1-phosphate uridylyltransferase yngb (EC 2.7.7.9) | protein | 289 | 41% helix, 24% strand | O31822 |
Pockets
7 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 453 | 0.65 | 0.78 | 61 | empty |
| 2 | 388 | 0.64 | 0.78 | 49 | empty |
| 3 | 93 | 0.51 | 0.83 | 22 | empty |
| 4 | 149 | 0.50 | 0.79 | 22 | empty |
| 5 | 129 | 0.45 | 0.77 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 1115 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O31822
- Elsewhere: RCSB PDB 7O2N · PDBe 7O2N · UniProt O31822
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