Research workbench
Cryo-EM structure of the mukbef-matp-DNA monomer (partially open conformation)
Analyse Cryo-EM structure of the mukbef-matp-DNA monomer (partially open conformation) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NYZ
- Type
- protein + DNA
- Length
- 4,290 residues
- Chains
- 14
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A0A0F7LRY2, A0A0F7LMQ4, A0A0F7LPV6, A0A6D2XA84, A0A0F7LUV5
- Ligands
- ATP, PNS, MG
Structure
electron microscopy · 11 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | — | protein | 1467 | — | A0A0F7LRY2 |
| C | — | protein | 335 | — | A0A0F7LMQ4 |
| D | — | protein | 94 | — | A0A0F7LMQ4 |
| E | — | protein | 212 | — | A0A0F7LPV6 |
| F | — | protein | 198 | — | A0A0F7LPV6 |
| G, H | — | protein | 72 | — | A0A6D2XA84 |
| I | — | protein | 134 | — | A0A0F7LUV5 |
| J | — | protein | 135 | — | A0A0F7LUV5 |
| K | — | dna | 22 | — | — |
| L | — | dna | 22 | — | — |
| M, N | — | dna | 30 | — | — |
Ligands and binding sites
- ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains A, B
- PNS · 4'-phosphopantetheine · ligand · 2 copies · chains A, B, G, H
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7NYZ · Cryo-EM structure of the MukBEF-MatP-DNA monomer (partially open conformation) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0F7LRY2
- Every structure of UniProt A0A0F7LMQ4
- Every structure of UniProt A0A0F7LPV6
- Every structure of UniProt A0A6D2XA84
- Every structure of UniProt A0A0F7LUV5
- Elsewhere: RCSB PDB 7NYZ · PDBe 7NYZ · UniProt A0A0F7LRY2 · UniProt A0A0F7LMQ4 · UniProt A0A0F7LPV6 · UniProt A0A6D2XA84 · UniProt A0A0F7LUV5
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.