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Crystal structure of the capsaspora owczarzaki MACROH2A macrodomain

Analyse Crystal structure of the capsaspora owczarzaki MACROH2A macrodomain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NY6
Type: protein
Length: 189 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Histone MACROH2A1.1
UniProt: A0A0D2UG83
Pockets: 1 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 39% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Histone MACROH2A1.1	protein	189	39% helix, 21% strand	A0A0D2UG83

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 7 copies · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	157	0.50	0.79	25	EDO

Compared structures

7NY6 · Crystal structure of the Capsaspora owczarzaki macroH2A macrodomain · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0D2UG83
Elsewhere: RCSB PDB 7NY6 · PDBe 7NY6 · UniProt A0A0D2UG83

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