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Structure of the C-terminal domain of the PORF19 capsid protein from murid gammaherpesvirus 68 (muhv-68)
Analyse Structure of the C-terminal domain of the PORF19 capsid protein from murid… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NXR
- Type
- protein
- Length
- 385 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid vertex component 2
- UniProt
- O41938
- Pockets
- 5 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 4% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Capsid vertex component 2 | protein | 385 | 54% helix, 4% strand | O41938 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 71 | 0.46 | 0.82 | 15 | empty |
| 2 | 89 | 0.38 | 0.77 | 21 | empty |
| 3 | 69 | 0.38 | 0.77 | 13 | empty |
| 4 | 71 | 0.32 | 0.75 | 19 | empty |
| 5 | 65 | 0.31 | 0.75 | 18 | empty |
Compared structures
- 7NXR · Structure of the C-terminal domain of the pORF19 capsid protein from murid… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O41938
- Elsewhere: RCSB PDB 7NXR · PDBe 7NXR · UniProt O41938
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