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Structure of the C-terminal domain of the PUL77 capsid protein from human cytomegalovirus (hcmv)

Analyse Structure of the C-terminal domain of the PUL77 capsid protein from human… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NXP
Type: protein
Length: 423 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid vertex component 2
UniProt: A0A3G6XKK5
Pockets: 7 · best druggability 0.50

Structure

x-ray diffraction · 1 distinct chain · 54% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid vertex component 2	protein	423	54% helix, 4% strand	A0A3G6XKK5

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.50	0.83	15	empty
2	69	0.40	0.79	14	empty
3	72	0.37	0.77	19	empty
4	70	0.33	0.76	18	empty
5	61	0.30	0.75	14	empty

Compared structures

7NXP · Structure of the C-terminal domain of the pUL77 capsid protein from human cytomegalovirus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A3G6XKK5
Elsewhere: RCSB PDB 7NXP · PDBe 7NXP · UniProt A0A3G6XKK5

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