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Wax synthase 1 from acinetobacter baylyi (ABWSD1) co-crystallized with myristic acid

Analyse Wax synthase 1 from acinetobacter baylyi (ABWSD1) co-crystallized with myristic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NXG
Type: protein
Length: 390 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: O-acyltransferase wsd
EC: 2.3.1.20, 2.3.1.75
UniProt: Q8GGG1
Ligands: MYR
Pockets: 3 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	O-acyltransferase wsd (EC 2.3.1.20, 2.3.1.75)	protein	390	32% helix, 26% strand	Q8GGG1

Ligands and binding sites

MYR · Myristic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	395	0.83	0.91	58	MYR
2	60	0.42	0.82	15	empty
3	50	0.27	0.74	14	empty

Compared structures

7NXG · Wax synthase 1 from Acinetobacter baylyi (AbWSD1) co-crystallized with myristic acid · the same entry in another collection · chain A against A, TM-score 1.00
Q8GGG1 · AlphaFold monomer V2.0 prediction for O-acyltransferase wsd (Q8GGG1) · a predicted model of the same protein · chain A against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8GGG1
Elsewhere: RCSB PDB 7NXG · PDBe 7NXG · UniProt Q8GGG1

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