Research workbench
Structure of the toxoplasma gondii kinase RON13, kinase-dead mutant
Analyse Structure of the toxoplasma gondii kinase RON13, kinase-dead mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NUR
- Type
- protein
- Length
- 1,044 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein kinase domain-containing protein
- UniProt
- S7VRX1
- Pockets
- 17 · best druggability 0.81
Structure
electron microscopy · 1 distinct chain · 46% helix, 7% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein kinase domain-containing protein | protein | 1044 | 46% helix, 7% strand | S7VRX1 |
Pockets
17 pockets found on a 1 Å grid, 8 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1087 | 0.81 | 0.82 | 94 | empty |
| 2 | 544 | 0.73 | 0.81 | 48 | empty |
| 3 | 524 | 0.69 | 0.79 | 44 | empty |
| 4 | 60 | 0.67 | 0.95 | 19 | empty |
| 5 | 248 | 0.61 | 0.80 | 29 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 7NUR · Structure of the Toxoplasma gondii kinase Ron13, kinase-dead mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt S7VRX1
- Elsewhere: RCSB PDB 7NUR · PDBe 7NUR · UniProt S7VRX1
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