Research workbench
Structure of the mature rsv ca lattice: hexamer with 2 adjacent pentamers (C2 symmetric)
Analyse Structure of the mature rsv ca lattice: hexamer with 2 adjacent pentamers (C2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NO5
- Type
- protein
- Length
- 1,296 residues
- Chains
- 6
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein P27, alternate cleaved 1
- UniProt
- P03322
- Pockets
- 13 · best druggability 0.55
Structure
electron microscopy · 1 distinct chain · 66% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F | Capsid protein P27, alternate cleaved 1 | protein | 216 | 66% helix, 0% strand | P03322 |
Pockets
13 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 494 | 0.55 | 0.72 | 96 | empty |
| 2 | 397 | 0.51 | 0.72 | 71 | empty |
| 3 | 371 | 0.50 | 0.72 | 76 | empty |
| 4 | 350 | 0.50 | 0.73 | 64 | empty |
| 5 | 357 | 0.50 | 0.73 | 70 | empty |
Interfaces
6 interfaces between chains.
- E–F · 159 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 158 Ų buried · 0 hydrogen bonds · protein-protein
- A–F · 146 Ų buried · 0 hydrogen bonds · protein-protein
- C–D · 145 Ų buried · 0 hydrogen bonds · protein-protein
- A–B · 79 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7NO5 · Structure of the mature RSV CA lattice: hexamer with 2 adjacent pentamers (C2 symmetric) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03322
- Elsewhere: RCSB PDB 7NO5 · PDBe 7NO5 · UniProt P03322
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