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Structure of the mature rsv ca lattice: hexamer derived from tubes (C2-symmetric)

Analyse Structure of the mature rsv ca lattice: hexamer derived from tubes… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NO2
Type: protein
Length: 660 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein P27, alternate cleaved 1
UniProt: P03322
Pockets: 8 · best druggability 0.74

Structure

electron microscopy · 1 distinct chain · 61% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Capsid protein P27, alternate cleaved 1	protein	220	61% helix, 0% strand	P03322

Pockets

8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1024	0.74	0.77	99	empty
2	744	0.67	0.75	61	empty
3	375	0.64	0.79	51	empty
4	171	0.48	0.76	22	empty
5	113	0.46	0.79	18	empty

Interfaces

2 interfaces between chains.

A–B · 1125 Å² buried · 7 hydrogen bonds · protein-protein
B–C · 983 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

7NO2 · Structure of the mature RSV CA lattice: hexamer derived from tubes (C2-symmetric) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P03322
Elsewhere: RCSB PDB 7NO2 · PDBe 7NO2 · UniProt P03322

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