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Solution structure of mlkl executioner domain in complex with a fragment

Analyse Solution structure of mlkl executioner domain in complex with a fragment in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NM5
Type: protein
Length: 157 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mixed lineage kinase domain-like protein
UniProt: Q8NB16
Ligands: UJ2
Pockets: 1 · best druggability 0.65

Structure

solution nmr · 1 distinct chain · 76% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mixed lineage kinase domain-like protein	protein	157	76% helix, 0% strand	Q8NB16

Ligands and binding sites

UJ2 · 2-[(~{S})-methoxy-(4-phenylphenyl)methyl]-3~{H}-benzimidazole-5-carboxylic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	275	0.65	0.82	27	UJ2

Compared structures

7NM5 · Solution structure of MLKL executioner domain in complex with a fragment · the same entry in another collection · chain A against A, TM-score 1.00
Q8NB16 · AlphaFold monomer V2.0 prediction for mixed lineage kinase domain- like protein (Q8NB16) · a predicted model of the same protein · chain A against A, TM-score 0.85

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8NB16
Elsewhere: RCSB PDB 7NM5 · PDBe 7NM5 · UniProt Q8NB16

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