Research workbench
Complex of rice blast (magnaporthe oryzae) effector protein APIKL2A with host target SHMA25 from setaria italica
Analyse Complex of rice blast (magnaporthe oryzae) effector protein APIKL2A with host… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NLJ
- Type
- protein
- Length
- 169 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- SHMA25; APIKL2A
- UniProt
- K3YAU1
Structure
x-ray diffraction · 2 distinct chains · 20% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | SHMA25 | protein | 78 | 32% helix, 36% strand | K3YAU1 |
| B | APIKL2A | protein | 91 | 10% helix, 42% strand | — |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 1101 Ų buried · 22 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 7NLJ · Complex of rice blast (Magnaporthe oryzae) effector protein APikL2A with host target… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K3YAU1
- Elsewhere: RCSB PDB 7NLJ · PDBe 7NLJ · UniProt K3YAU1
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.