Research workbench
SARS-cov-2 main protease (mpro) in a novel conformational state.
Analyse SARS-cov-2 main protease (mpro) in a novel conformational state. in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7NIJ
- Type
- protein
- Length
- 300 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 2'-O-methyltransferase
- EC
- 2.7.7.48, 3.4.19.12, 3.4.22.69, 3.6.4.12, 3.6.4.13
- UniProt
- A0A6H1TGT6
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 26% helix, 29% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 2'-O-methyltransferase (EC 2.7.7.48, 3.4.19.12, 3.4.22.69, 3.6.4.12, 3.6.4.13) | protein | 300 | 26% helix, 29% strand | A0A6H1TGT6 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 186 | 0.46 | 0.75 | 27 | empty |
| 2 | 131 | 0.39 | 0.74 | 24 | empty |
Compared structures
- 7NIJ · SARS-CoV-2 main protease (Mpro) in a novel conformational state. · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6H1TGT6
- Elsewhere: RCSB PDB 7NIJ · PDBe 7NIJ · UniProt A0A6H1TGT6
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