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Crystal structure of C-terminally truncated geobacillus thermoleovorans nucleoid occlusion protein noc

Analyse Crystal structure of C-terminally truncated geobacillus thermoleovorans… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NFU
Type: protein
Length: 434 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoid occlusion protein
UniProt: G8N1K9
Ligands: SO4
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · 2 distinct chains · 56% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoid occlusion protein	protein	221	57% helix, 11% strand	G8N1K9
B	Nucleoid occlusion protein	protein	213	55% helix, 11% strand	G8N1K9

Ligands and binding sites

SO4 · Sulfate ion · ion · 27 copies · chains A, B
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.58	0.82	24	SO4
2	128	0.49	0.79	27	SO4

Interfaces

1 interface between chains.

A–B · 646 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

7NFU · Crystal structure of C-terminally truncated Geobacillus thermoleovorans nucleoid… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt G8N1K9
Elsewhere: RCSB PDB 7NFU · PDBe 7NFU · UniProt G8N1K9

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