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Structure of ESTD11 S144A in complex with naproxen P-nitrophenol ester

Analyse Structure of ESTD11 S144A in complex with naproxen P-nitrophenol ester in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7NB5
Type: protein
Length: 295 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ESTD11 S144A
Ligands: U68
Pockets: 1 · best druggability 0.80

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	ESTD11 S144A	protein	295	42% helix, 17% strand	—

Ligands and binding sites

U68 · (4-nitrophenyl) (2~{S})-2-(6-methoxynaphthalen-2-yl) propanoate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	661	0.80	0.85	55	U68

Compared structures

7NB5 · Structure of EstD11 S144A in complex with naproxen p-nitrophenol ester · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 7NB5 · PDBe 7NB5

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