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Cryo-EM structure of MFSD2A
Analyse Cryo-EM structure of MFSD2A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7N98
- Type
- protein
- Length
- 473 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Sodium-dependent lysophosphatidylcholine symporter 1
- UniProt
- Q9DA75
- Pockets
- 5 · best druggability 0.82
Structure
electron microscopy · 1 distinct chain · 67% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Sodium-dependent lysophosphatidylcholine symporter 1 | protein | 473 | 67% helix, 1% strand | Q9DA75 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1024 | 0.82 | 0.82 | 86 | empty |
| 2 | 360 | 0.59 | 0.76 | 38 | empty |
| 3 | 148 | 0.48 | 0.78 | 30 | empty |
| 4 | 63 | 0.41 | 0.81 | 16 | empty |
| 5 | 82 | 0.37 | 0.77 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9DA75
- Elsewhere: RCSB PDB 7N98 · PDBe 7N98 · UniProt Q9DA75
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