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The cryoem structure of lbpb from N. gonorrhoeae in complex with lactoferrin

Analyse The cryoem structure of lbpb from N. gonorrhoeae in complex with lactoferrin in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
7N88
Type
protein
Length
1,220 residues
Chains
2
Method
electron microscopy
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
UniProt
Q9Z4N2, P02788
Ligands
BCT, FE

Structure

electron microscopy · 2 distinct chains.

ChainMoleculeTypeResiduesSecondary structureUniProt
A—protein532—Q9Z4N2
B—protein688—P02788

Ligands and binding sites

  • BCT · Bicarbonate ion · ligand · 2 copies · chains B
  • FE · Fe (III) ion · metal · 2 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

  • 7N88 · The cryoEM structure of LbpB from N. gonorrhoeae in complex with lactoferrin · the same entry in another collection · chain A against A, TM-score 1.00
  • P02788 · AlphaFold monomer V2.0 prediction for lactotransferrin (P02788) · a predicted model of the same protein · chain B against A, TM-score 0.98

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