Research workbench

Mouse norovirus (mnv-1) capsid at pH 7.5

Analyse Mouse norovirus (mnv-1) capsid at pH 7.5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7N7F
Type: protein
Length: 617 residues
Chains: 3
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Capsid protein
UniProt: Q80J94
Pockets: 3 · best druggability 0.38

Structure

electron microscopy · 3 distinct chains · 10% helix, 32% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Capsid protein	protein	207	11% helix, 31% strand	Q80J94
B	Capsid protein	protein	211	10% helix, 30% strand	Q80J94
C	Capsid protein	protein	199	9% helix, 34% strand	Q80J94

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	78	0.38	0.78	21	empty
2	92	0.37	0.76	18	empty
3	51	0.34	0.77	10	empty

Interfaces

3 interfaces between chains.

A–C · 896 Å² buried · 12 hydrogen bonds · protein-protein
A–B · 873 Å² buried · 12 hydrogen bonds · protein-protein
B–C · 866 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

7N7F · Mouse norovirus (MNV-1) capsid at pH 7.5 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q80J94
Elsewhere: RCSB PDB 7N7F · PDBe 7N7F · UniProt Q80J94

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.