Research workbench

Structure of ATATM3 in the inward-facing conformation

Analyse Structure of ATATM3 in the inward-facing conformation in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7N58
Type: protein
Length: 1,200 residues
Chains: 2
Method: electron microscopy
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: ABC transporter B family member 25, mitochondrial
UniProt: Q9LVM1
Pockets: 20 · best druggability 0.82

Structure

electron microscopy · 1 distinct chain · 60% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	ABC transporter B family member 25, mitochondrial	protein	600	60% helix, 9% strand	Q9LVM1

Pockets

20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1000	0.82	0.83	82	empty
2	944	0.77	0.79	76	empty
3	153	0.73	0.91	24	empty
4	200	0.72	0.89	39	empty
5	299	0.71	0.84	36	empty

Interfaces

1 interface between chains.

A–B · 4824 Å² buried · 21 hydrogen bonds · protein-protein

Compared structures

7N58 · Structure of AtAtm3 in the inward-facing conformation · the same entry in another collection · chain B against B, TM-score 1.00
Q9LVM1 · AlphaFold monomer V2.0 prediction for ABC transporter B family member 25, mitochondrial… · a predicted model of the same protein · chain B against A, TM-score 0.91

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9LVM1
Elsewhere: RCSB PDB 7N58 · PDBe 7N58 · UniProt Q9LVM1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.