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X-ray crystallographic structure model of lactococcus lactis prolidase mutant D36S

Analyse X-ray crystallographic structure model of lactococcus lactis prolidase mutant… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7N02
Type: protein
Length: 724 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aminopeptidase P family protein
EC: 3.4.13.9
UniProt: A8WBX8
Ligands: MN
Pockets: 6 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Aminopeptidase P family protein (EC 3.4.13.9)	protein	362	37% helix, 23% strand	A8WBX8

Ligands and binding sites

MN · Manganese (II) ion · metal · 4 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	358	0.62	0.78	36	empty
2	322	0.54	0.74	27	empty
3	220	0.50	0.76	26	empty
4	146	0.46	0.77	21	empty
5	108	0.44	0.78	17	empty

Interfaces

1 interface between chains.

A–B · 859 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

7N02 · X-ray crystallographic structure model of Lactococcus lactis prolidase mutant D36S · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A8WBX8
Elsewhere: RCSB PDB 7N02 · PDBe 7N02 · UniProt A8WBX8

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