Research workbench
M. tb AG85C modified by thl-10D
Analyse M. tb AG85C modified by thl-10D in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MYG
- Type
- protein
- Length
- 530 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Diacylglycerol acyltransferase
- EC
- 2.3.1.-
- UniProt
- A0A045JX50
- Pockets
- 4 · best druggability 0.62
Structure
x-ray diffraction · 2 distinct chains · 40% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Diacylglycerol acyltransferase (EC 2.3.1.-) | protein | 266 | 40% helix, 17% strand | A0A045JX50 |
| B | Diacylglycerol acyltransferase (EC 2.3.1.-) | protein | 264 | 41% helix, 17% strand | A0A045JX50 |
Ligands and binding sites
- GOL · Glycerol · additive · 14 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 363 | 0.62 | 0.78 | 55 | GOL |
| 2 | 211 | 0.50 | 0.76 | 32 | GOL |
| 3 | 60 | 0.34 | 0.77 | 20 | GOL |
| 4 | 55 | 0.31 | 0.76 | 16 | GOL |
Interfaces
1 interface between chains.
- A–B · 619 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 7MYG · M. tb Ag85C modified by THL-10d · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A045JX50
- Elsewhere: RCSB PDB 7MYG · PDBe 7MYG · UniProt A0A045JX50
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