Research workbench
Crystal structure of tolb from acinetobacter baumannii
Analyse Crystal structure of tolb from acinetobacter baumannii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MX5
- Type
- protein
- Length
- 799 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tol-pal system protein tolb
- UniProt
- A0A6F8TCJ6
- Pockets
- 8 · best druggability 0.77
Structure
x-ray diffraction · 2 distinct chains · 8% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tol-pal system protein tolb | protein | 400 | 9% helix, 46% strand | A0A6F8TCJ6 |
| B | Tol-pal system protein tolb | protein | 399 | 8% helix, 44% strand | A0A6F8TCJ6 |
Pockets
8 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 316 | 0.77 | 0.88 | 29 | empty |
| 2 | 289 | 0.76 | 0.88 | 28 | empty |
| 3 | 375 | 0.60 | 0.76 | 54 | empty |
| 4 | 144 | 0.56 | 0.82 | 26 | empty |
| 5 | 235 | 0.54 | 0.77 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 616 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7MX5 · Crystal structure of TolB from Acinetobacter baumannii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A6F8TCJ6
- Elsewhere: RCSB PDB 7MX5 · PDBe 7MX5 · UniProt A0A6F8TCJ6
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