Research workbench
Norovirus T=3 GII.4 hov vlp
Analyse Norovirus T=3 GII.4 hov vlp in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MRY
- Type
- protein
- Length
- 1,460 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- VP1
- UniProt
- A9YYE4
- Pockets
- 15 · best druggability 0.74
Structure
electron microscopy · 2 distinct chains · 7% helix, 34% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | VP1 | protein | 488 | 7% helix, 32% strand | A9YYE4 |
| B, C | VP1 | protein | 486 | 7% helix, 36% strand | A9YYE4 |
Pockets
15 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 550 | 0.74 | 0.82 | 51 | empty |
| 2 | 550 | 0.72 | 0.80 | 60 | empty |
| 3 | 426 | 0.67 | 0.80 | 58 | empty |
| 4 | 287 | 0.56 | 0.77 | 35 | empty |
| 5 | 95 | 0.51 | 0.83 | 20 | empty |
Interfaces
3 interfaces between chains.
- A–C · 835 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 760 Ų buried · 2 hydrogen bonds · protein-protein
- B–C · 754 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 7MRY · Norovirus T=3 GII.4 HOV VLP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A9YYE4
- Elsewhere: RCSB PDB 7MRY · PDBe 7MRY · UniProt A9YYE4
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