Research workbench
Native rhoph complex of the malaria parasite plasmodium falciparum
Analyse Native rhoph complex of the malaria parasite plasmodium falciparum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MRW
- Type
- protein
- Length
- 2,887 residues
- Chains
- 3
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytoadherence linked asexual protein 3.1; High molecular weight rhoptry protein 2; High…
- UniProt
- A0A2I0BTS3, A0A2I0BSI4, W7JUX6
- Pockets
- 20 · best druggability 0.89
Structure
electron microscopy · 3 distinct chains · 56% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytoadherence linked asexual protein 3.1 | protein | 1209 | 57% helix, 3% strand | A0A2I0BTS3 |
| B | High molecular weight rhoptry protein 2 | protein | 972 | 60% helix, 2% strand | A0A2I0BSI4 |
| C | High molecular weight rhoptry protein 3 | protein | 706 | 49% helix, 8% strand | W7JUX6 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1136 | 0.89 | 0.90 | 130 | empty |
| 2 | 814 | 0.88 | 0.91 | 102 | empty |
| 3 | 1080 | 0.87 | 0.89 | 103 | empty |
| 4 | 695 | 0.78 | 0.82 | 81 | empty |
| 5 | 83 | 0.77 | 0.98 | 20 | empty |
Interfaces
3 interfaces between chains.
- A–C · 5785 Ų buried · 62 hydrogen bonds · protein-protein
- A–B · 3562 Ų buried · 40 hydrogen bonds · protein-protein
- B–C · 264 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 13 disulfide (disulfide).
Compared structures
- 7MRW · Native RhopH complex of the malaria parasite Plasmodium falciparum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2I0BTS3
- Every structure of UniProt A0A2I0BSI4
- Every structure of UniProt W7JUX6
- Elsewhere: RCSB PDB 7MRW · PDBe 7MRW · UniProt A0A2I0BTS3 · UniProt A0A2I0BSI4 · UniProt W7JUX6
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