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Crystal structure of a novel ubiquitin-like tincr

Analyse Crystal structure of a novel ubiquitin-like tincr in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7MRJ
Type: protein
Length: 160 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin domain-containing protein tincr
UniProt: A0A1B0GVN0
Ligands: CL
Pockets: 1 · best druggability 0.35

Structure

x-ray diffraction · 2 distinct chains · 15% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin domain-containing protein tincr	protein	85	16% helix, 34% strand	A0A1B0GVN0
B	Ubiquitin domain-containing protein tincr	protein	75	13% helix, 39% strand	A0A1B0GVN0

Ligands and binding sites

CL · Chloride ion · ion · chains B
GOL · Glycerol · additive · chains B
ACT · Acetate ion · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	85	0.35	0.75	14	empty

Interfaces

1 interface between chains.

A–B · 525 Å² buried · 5 hydrogen bonds · protein-protein

Compared structures

7MRJ · Crystal structure of a novel ubiquitin-like TINCR · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A1B0GVN0
Elsewhere: RCSB PDB 7MRJ · PDBe 7MRJ · UniProt A0A1B0GVN0

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