Research workbench
P. putida mandelate racemase forms an oxobenzoxaborole adduct with 2- formylphenylboronic acid
Analyse P. putida mandelate racemase forms an oxobenzoxaborole adduct with 2… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MQX
- Type
- protein
- Length
- 2,857 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P11444
- Ligands
- ZMD, MG
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, F, G, H | — | protein | 357 | — | P11444 |
| E | — | protein | 358 | — | P11444 |
Ligands and binding sites
- ZMD · (3S)-2,1-benzoxaborole-1,3(3H)-diol · ligand · 8 copies · chains A, B, C, D, E, F, G, H
- MG · Magnesium ion · metal · 8 copies · chains A, B, C, D, E, F, G, H
- EDO · 1,2-ethanediol · additive · 24 copies · chains A, H, B, C, D, E, F, G
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MQX · P. putida mandelate racemase forms an oxobenzoxaborole adduct with 2-formylphenylboronic… · the same entry in another collection · chain H against H, TM-score 1.00
- P11444 · AlphaFold monomer V2.0 prediction for mandelate racemase (P11444) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P11444
- Elsewhere: RCSB PDB 7MQX · PDBe 7MQX · UniProt P11444
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