Research workbench
Burkholderia sp. TJI49 guanidine-I riboswitch
Analyse Burkholderia sp. TJI49 guanidine-I riboswitch in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MLW
- Type
- RNA
- Length
- 125 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Guanidine-I riboswitch
- Ligands
- GAI, MG, K, SR, PO4
- Pockets
- 5 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| F | Guanidine-I riboswitch | rna | 125 | — | — |
Ligands and binding sites
- GAI · Guanidine · ligand · chains F
- MG · Magnesium ion · metal · 3 copies · chains F
- K · Potassium ion · metal · 3 copies · chains F
- SR · Strontium ion · metal · 2 copies · chains F
- PO4 · Phosphate ion · ion · 4 copies · chains F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 556 | 0.60 | 0.74 | 25 | MG |
| 2 | 542 | 0.58 | 0.73 | 33 | empty |
| 3 | 371 | 0.54 | 0.74 | 24 | MG |
| 4 | 136 | 0.48 | 0.79 | 17 | MG, K |
| 5 | 94 | 0.37 | 0.77 | 15 | SR |
Compared structures
- 7MLW · Burkholderia sp. TJI49 Guanidine-I riboswitch · the same entry in another collection · chain F against F, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7MLW · PDBe 7MLW
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