Research workbench
Complex of human thrombin with xc-43
Analyse Complex of human thrombin with xc-43 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MJ5
- Type
- protein
- Length
- 1,893 residues
- Chains
- 18
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- A2IAB2, P00734
- Ligands
- NAG, NA
Structure
x-ray diffraction · 10 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 31 | — | A2IAB2 |
| L | — | protein | 30 | — | P00734 |
| H, C, G, J | — | protein | 257 | — | P00734 |
| B | — | protein | 31 | — | P00734 |
| D, F, K | — | protein | 27 | — | P00734 |
| E | — | protein | 256 | — | P00734 |
| I | — | protein | 29 | — | P00734 |
| M | — | protein | 258 | — | P00734 |
| N, O, Q, R | — | protein | 30 | — | A2IAB2 |
| P | — | protein | 29 | — | A2IAB2 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 6 copies · chains H, C, E, G, J, M
- NA · Sodium ion · metal · 6 copies · chains H, C, E, G, J, M
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7MJ5 · complex of human thrombin with XC-43 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A2IAB2
- Every structure of UniProt P00734
- Elsewhere: RCSB PDB 7MJ5 · PDBe 7MJ5 · UniProt A2IAB2 · UniProt P00734
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