Research workbench
Drosophila melanogaster canoe PDZ domain in complex with echinoid C- terminal region
Analyse Drosophila melanogaster canoe PDZ domain in complex with echinoid C- terminal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7MFW
- Type
- protein
- Length
- 191 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CANOE,ECHINOID
- UniProt
- Q9VN82, Q9BN17
- Pockets
- 1 · best druggability 0.56
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CANOE,ECHINOID | protein | 93 | 15% helix, 37% strand | Q9VN82, Q9BN17 |
| B | CANOE,ECHINOID | protein | 98 | 14% helix, 41% strand | Q9VN82, Q9BN17 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 252 | 0.56 | 0.78 | 31 | empty |
Interfaces
1 interface between chains.
- A–B · 565 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 7MFW · Drosophila melanogaster Canoe PDZ domain in complex with Echinoid C-terminal region · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9VN82
- Every structure of UniProt Q9BN17
- Elsewhere: RCSB PDB 7MFW · PDBe 7MFW · UniProt Q9VN82 · UniProt Q9BN17
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