Research workbench
Bean pod mottle virus (bpmv), top component
Analyse Bean pod mottle virus (bpmv), top component in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1PGW
- Type
- protein
- Length
- 536 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Bean pod mottle virus small (S) subunit; Bean pod mottle virus large (L) subunit
- UniProt
- P23009
- Pockets
- 4 · best druggability 0.54
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 45% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| 1 | Bean pod mottle virus small (S) subunit | protein | 185 | 6% helix, 46% strand | P23009 |
| 2 | Bean pod mottle virus large (L) subunit | protein | 351 | 11% helix, 45% strand | P23009 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 51 | 0.54 | 0.89 | 17 | empty |
| 2 | 97 | 0.48 | 0.81 | 28 | empty |
| 3 | 70 | 0.33 | 0.75 | 18 | empty |
| 4 | 61 | 0.29 | 0.74 | 15 | empty |
Interfaces
1 interface between chains.
- 1–2 · 2077 Ų buried · 30 hydrogen bonds · protein-protein
Compared structures
- 1PGW · Bean pod mottle virus (bpmv), top component · the same entry in another collection · chain 1 against 1, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P23009
- Elsewhere: RCSB PDB 1PGW · PDBe 1PGW · UniProt P23009
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