Research workbench
Zika virus RNA promoter stem-loop a with tRNA-scaffold
Analyse Zika virus RNA promoter stem-loop a with tRNA-scaffold in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LYG
- Type
- RNA
- Length
- 142 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA promoter stem-loop a fused with tRNA
- Pockets
- 6 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA promoter stem-loop a fused with tRNA | rna | 142 | — | — |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 528 | 0.59 | 0.74 | 31 | empty |
| 2 | 429 | 0.57 | 0.75 | 23 | empty |
| 3 | 284 | 0.45 | 0.72 | 24 | empty |
| 4 | 94 | 0.36 | 0.76 | 12 | empty |
| 5 | 54 | 0.33 | 0.78 | 12 | empty |
Compared structures
- 7LYG · Zika virus RNA promoter stem-loop A with tRNA-scaffold · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7LYG · PDBe 7LYG
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