Research workbench
Crystal structure of SARS-cov-2 S ntd bound to S2M28 Fab
Analyse Crystal structure of SARS-cov-2 S ntd bound to S2M28 Fab in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LY3
- Type
- protein
- Length
- 1,429 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P0DTC2
- Ligands
- XYL, NAG, FUC, BMA, MAN, UNX, SO4
Structure
x-ray diffraction · 5 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 284 | — | P0DTC2 |
| B | — | protein | 282 | — | P0DTC2 |
| D, F | — | protein | 221 | — | — |
| C | — | protein | 211 | — | — |
| E | — | protein | 210 | — | — |
Ligands and binding sites
- XYL · Xylitol · ligand · 2 copies · chains A, B
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 19 copies · chains A, D, B, F
- FUC · alpha-L-fucopyranose · sugar · 9 copies · chains D, A, B, F
- BMA · beta-D-mannopyranose · sugar · 5 copies
- MAN · alpha-D-mannopyranose · sugar · 2 copies
- UNX · Unknown atom or ion · ion · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains D, F
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7LY3 · Crystal structure of SARS-CoV-2 S NTD bound to S2M28 Fab · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7LY3 · PDBe 7LY3 · UniProt P0DTC2
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