Research workbench
Structural and biochemical insight into assembly of molecular motors involved in viral DNA packaging
Analyse Structural and biochemical insight into assembly of molecular motors involved… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LW0
- Type
- protein
- Length
- 448 residues
- Chains
- 8
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Terminase small subunit
- EC
- 3.6.4.-
- UniProt
- P03707
- Pockets
- 7 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H | Terminase small subunit (EC 3.6.4.-) | protein | 56 | 52% helix, 11% strand | P03707 |
Pockets
7 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 415 | 0.76 | 0.86 | 38 | empty |
| 2 | 171 | 0.48 | 0.77 | 26 | empty |
| 3 | 120 | 0.43 | 0.77 | 18 | empty |
| 4 | 104 | 0.39 | 0.76 | 19 | empty |
| 5 | 88 | 0.35 | 0.74 | 14 | empty |
Interfaces
15 interfaces between chains.
- D–H · 651 Ų buried · 8 hydrogen bonds · protein-protein
- B–E · 639 Ų buried · 8 hydrogen bonds · protein-protein
- B–G · 631 Ų buried · 6 hydrogen bonds · protein-protein
- C–H · 619 Ų buried · 9 hydrogen bonds · protein-protein
- D–F · 580 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 7LW0 · Structural and Biochemical Insight into Assembly of Molecular Motors Involved in Viral… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03707
- Elsewhere: RCSB PDB 7LW0 · PDBe 7LW0 · UniProt P03707
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