Research workbench
Perfringolysin O
Analyse Perfringolysin O in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 1PFO
- Type
- protein
- Length
- 471 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Perfringolysin O
- UniProt
- P19995
- Pockets
- 6 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 20% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Perfringolysin O | protein | 471 | 20% helix, 40% strand | P19995 |
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 231 | 0.61 | 0.81 | 29 | empty |
| 2 | 166 | 0.57 | 0.81 | 26 | empty |
| 3 | 137 | 0.49 | 0.79 | 30 | empty |
| 4 | 53 | 0.43 | 0.83 | 14 | empty |
| 5 | 72 | 0.42 | 0.80 | 21 | empty |
Compared structures
- 1PFO · Perfringolysin O · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19995
- Elsewhere: RCSB PDB 1PFO · PDBe 1PFO · UniProt P19995
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