Research workbench

Crystal structure of vibrio cholerae dsba in complex with bile salt taurocholate

Analyse Crystal structure of vibrio cholerae dsba in complex with bile salt taurocholate in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7LUI
Type: protein
Length: 180 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: THIOL:DISULFIDE interchange protein dsba
UniProt: P32557
Ligands: TCH
Pockets: 1 · best druggability 0.32

Structure

x-ray diffraction · 1 distinct chain · 52% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	THIOL:DISULFIDE interchange protein dsba	protein	180	52% helix, 13% strand	P32557

Ligands and binding sites

TCH · Taurocholic acid · ligand · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.32	0.74	15	TCH

Compared structures

7LUI · Crystal structure of Vibrio cholerae DsbA in complex with bile salt taurocholate · the same entry in another collection · chain A against A, TM-score 1.00
P32557 · AlphaFold monomer V2.0 prediction for THIOL:DISULFIDE interchange protein dsba (P32557) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P32557
Elsewhere: RCSB PDB 7LUI · PDBe 7LUI · UniProt P32557

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.