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Crystal structure of GH5_18 from streptomyces cattleya in complex with glcnac

Analyse Crystal structure of GH5_18 from streptomyces cattleya in complex with glcnac in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7LR7
Type: protein
Length: 416 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein SCGH5_18
UniProt: F8JJ04
Ligands: AE3, NAG
Pockets: 2 · best druggability 0.58

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein SCGH5_18	protein	416	44% helix, 15% strand	F8JJ04

Ligands and binding sites

AE3 · 2-(2-ethoxyethoxy)ethanol · ligand · chains A
NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	218	0.58	0.80	29	NAG
2	130	0.51	0.80	29	empty

Compared structures

7LR7 · Crystal structure of GH5_18 from Streptomyces cattleya in complex with GlcNAc · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F8JJ04
Elsewhere: RCSB PDB 7LR7 · PDBe 7LR7 · UniProt F8JJ04

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