Research workbench
Structure of human SETD3 methyl-transferase in complex with 2A protease from coxsackievirus B3
Analyse Structure of human SETD3 methyl-transferase in complex with 2A protease from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LMS
- Type
- protein
- Length
- 612 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protease 2A; Actin-histidine N-methyltransferase
- EC
- 3.4.22.29, 2.1.1.85
- UniProt
- P03313, Q86TU7
- Ligands
- SAH, ZN
- Pockets
- 7 · best druggability 0.77
Structure
electron microscopy · 2 distinct chains · 41% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Protease 2A (EC 3.4.22.29) | protein | 138 | 12% helix, 49% strand | P03313 |
| A | Actin-histidine N-methyltransferase (EC 2.1.1.85) | protein | 474 | 49% helix, 12% strand | Q86TU7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 725 | 0.77 | 0.82 | 73 | SAH |
| 2 | 463 | 0.67 | 0.79 | 61 | empty |
| 3 | 144 | 0.48 | 0.78 | 24 | empty |
| 4 | 76 | 0.38 | 0.78 | 20 | empty |
| 5 | 52 | 0.35 | 0.79 | 16 | empty |
Interfaces
1 interface between chains.
- B–A · 1308 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 7LMS · Structure of human SetD3 methyl-transferase in complex with 2A protease from… · the same entry in another collection · chain B against B, TM-score 1.00
- Q86TU7 · AlphaFold monomer V2.0 prediction for actin-histidine N-methyltransferase (Q86TU7) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03313
- Every structure of UniProt Q86TU7
- Elsewhere: RCSB PDB 7LMS · PDBe 7LMS · UniProt P03313 · UniProt Q86TU7
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