Research workbench
Crystal structure of the ZN(II)-bound adcaii E280Q mutant variant of streptococcus pneumoniae
Analyse Crystal structure of the ZN(II)-bound adcaii E280Q mutant variant of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LM7
- Type
- protein
- Length
- 270 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Adhesion protein
- UniProt
- V8IJK5
- Ligands
- ZN, CL
- Pockets
- 4 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Adhesion protein | protein | 270 | 41% helix, 13% strand | V8IJK5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 119 | 0.40 | 0.75 | 21 | empty |
| 2 | 56 | 0.37 | 0.80 | 14 | empty |
| 3 | 53 | 0.29 | 0.75 | 12 | empty |
| 4 | 63 | 0.27 | 0.73 | 19 | empty |
Compared structures
- 7LM7 · Crystal structure of the Zn(II)-bound AdcAII E280Q mutant variant of Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt V8IJK5
- Elsewhere: RCSB PDB 7LM7 · PDBe 7LM7 · UniProt V8IJK5
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