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Crystal structure of the ZN(II)-bound adcaii H65A mutant variant of streptococcus pneumoniae

Analyse Crystal structure of the ZN(II)-bound adcaii H65A mutant variant of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7LM5
Type: protein
Length: 266 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Adhesion protein
UniProt: V8IJK5
Ligands: ZN, NA, CL
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 14% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Adhesion protein	protein	266	44% helix, 14% strand	V8IJK5

Ligands and binding sites

ZN · Zinc ion · metal · 11 copies · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	276	0.56	0.77	52	CL

Compared structures

7LM5 · Crystal structure of the Zn(II)-bound AdcAII H65A mutant variant of Streptococcus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt V8IJK5
Elsewhere: RCSB PDB 7LM5 · PDBe 7LM5 · UniProt V8IJK5

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