Research workbench
Crystal structure of untwinned human GABARAPL2
Analyse Crystal structure of untwinned human GABARAPL2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LK3
- Type
- protein
- Length
- 236 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gamma-aminobutyric acid receptor-associated protein-like 2
- UniProt
- P60520
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 32% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Gamma-aminobutyric acid receptor-associated protein-like 2 | protein | 118 | 32% helix, 22% strand | P60520 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 247 | 0.52 | 0.76 | 32 | empty |
| 2 | 72 | 0.36 | 0.77 | 17 | empty |
| 3 | 54 | 0.33 | 0.77 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 185 Ų buried · 1 hydrogen bond · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P60520
- Elsewhere: RCSB PDB 7LK3 · PDBe 7LK3 · UniProt P60520
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