Research workbench
Structure of the bacteroides fragilis CD-ntase cdnb in complex with ADP
Analyse Structure of the bacteroides fragilis CD-ntase cdnb in complex with ADP in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LJO
- Type
- protein
- Length
- 290 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- CD-ntase
- UniProt
- A0A016JNT0
- Ligands
- ADP, MG
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | CD-ntase | protein | 290 | 50% helix, 13% strand | A0A016JNT0 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 636 | 0.69 | 0.77 | 46 | ADP, MG |
| 2 | 98 | 0.46 | 0.80 | 19 | empty |
Compared structures
- 7LJO · Structure of the Bacteroides fragilis CD-NTase CdnB in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A016JNT0
- Elsewhere: RCSB PDB 7LJO · PDBe 7LJO · UniProt A0A016JNT0
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