Research workbench
The structure of bacteroides plebeius L-galactose dehydrogenase
Analyse The structure of bacteroides plebeius L-galactose dehydrogenase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LH6
- Type
- protein
- Length
- 571 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-galactose dehydrogenase
- UniProt
- B5CY82
- Pockets
- 4 · best druggability 0.84
Structure
x-ray diffraction · 2 distinct chains · 43% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | L-galactose dehydrogenase | protein | 285 | 44% helix, 15% strand | B5CY82 |
| A | L-galactose dehydrogenase | protein | 286 | 43% helix, 14% strand | B5CY82 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1111 | 0.84 | 0.85 | 92 | empty |
| 2 | 71 | 0.37 | 0.78 | 15 | empty |
| 3 | 74 | 0.33 | 0.75 | 13 | empty |
| 4 | 52 | 0.29 | 0.75 | 13 | empty |
Interfaces
1 interface between chains.
- B–A · 1149 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
- 7LH6 · The structure of Bacteroides plebeius L-galactose dehydrogenase · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5CY82
- Elsewhere: RCSB PDB 7LH6 · PDBe 7LH6 · UniProt B5CY82
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