Research workbench
Asymmetric unit for phage qbeta small prolate particle
Analyse Asymmetric unit for phage qbeta small prolate particle in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LGH
- Type
- protein
- Length
- 2,904 residues
- Chains
- 22
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Capsid protein
- UniProt
- P03615
- Pockets
- 20 · best druggability 0.73
Structure
electron microscopy · 1 distinct chain · 22% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, L, D, M, E, N, F, O, G, P, H, Q, R, I, S, J, T, U, K, V | Capsid protein | protein | 132 | 22% helix, 40% strand | P03615 |
Pockets
20 pockets found on a 1 Å grid, 13 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 321 | 0.73 | 0.85 | 51 | empty |
| 2 | 795 | 0.72 | 0.77 | 78 | empty |
| 3 | 289 | 0.68 | 0.83 | 48 | empty |
| 4 | 483 | 0.68 | 0.79 | 63 | empty |
| 5 | 386 | 0.66 | 0.80 | 38 | empty |
Interfaces
65 interfaces between chains.
- A–B · 3543 Ų buried · 42 hydrogen bonds · protein-protein
- G–P · 3538 Ų buried · 46 hydrogen bonds · protein-protein
- H–Q · 3524 Ų buried · 36 hydrogen bonds · protein-protein
- E–N · 3494 Ų buried · 46 hydrogen bonds · protein-protein
- F–O · 3494 Ų buried · 44 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 15 disulfide (disulfide).
Compared structures
- 7LGH · Asymmetric unit for phage Qbeta small prolate particle · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P03615
- Elsewhere: RCSB PDB 7LGH · PDBe 7LGH · UniProt P03615
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