Research workbench
SARS-cov-2 spike protein tm domain
Analyse SARS-cov-2 spike protein tm domain in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7LC8
- Type
- protein
- Length
- 63 residues
- Chains
- 3
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Spike protein S2'
- UniProt
- P0DTC2
Structure
solution nmr · 1 distinct chain · 90% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Spike protein S2' | protein | 21 | 90% helix, 0% strand | P0DTC2 |
Interfaces
3 interfaces between chains.
- A–B · 322 Ų buried · 0 hydrogen bonds · protein-protein
- B–C · 318 Ų buried · 0 hydrogen bonds · protein-protein
- A–C · 260 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 7LC8 · SARS-CoV-2 spike Protein TM domain · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0DTC2
- Elsewhere: RCSB PDB 7LC8 · PDBe 7LC8 · UniProt P0DTC2
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