Research workbench
BG505 SOSIP.V5.2 N241/N289 in complex with the polyclonal Fab pabc-5 from animal RH.33311 (WK26 time point)
Analyse BG505 SOSIP.V5.2 N241/N289 in complex with the polyclonal Fab pabc-5 from… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7L8Y
- Type
- protein
- Length
- 1,951 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 113 | — | — |
| L | — | protein | 99 | — | — |
| C | — | protein | 437 | — | — |
| D | — | protein | 142 | — | — |
| A | — | protein | 439 | — | — |
| B | — | protein | 143 | — | — |
| E | — | protein | 435 | — | — |
| F | — | protein | 143 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 71 copies · chains C, A, E, D, B, H, L, F
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains C, A, E
- BMA · beta-D-mannopyranose · sugar · 3 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L8Y · BG505 SOSIP.v5.2 N241/N289 in complex with the polyclonal Fab pAbC-5 from animal Rh.33311… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7L8Y · PDBe 7L8Y
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