Research workbench
BG505 SOSIP.V5.2(7S) in complex with the polyclonal Fab pabc-4 from animal RH.33172 (WK38 time point)
Analyse BG505 SOSIP.V5.2(7S) in complex with the polyclonal Fab pabc-4 from animal… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7L8S
- Type
- protein
- Length
- 1,925 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| C | — | protein | 440 | — | — |
| D | — | protein | 128 | — | — |
| E | — | protein | 441 | — | — |
| F | — | protein | 129 | — | — |
| A | — | protein | 446 | — | — |
| B | — | protein | 129 | — | — |
| H | — | protein | 112 | — | — |
| L | — | protein | 100 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 93 copies · chains C, E, A, H, B, L, D, F
- MAN · alpha-D-mannopyranose · sugar · 6 copies · chains C, E
- BMA · beta-D-mannopyranose · sugar · 4 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L8S · BG505 SOSIP.v5.2(7S) in complex with the polyclonal Fab pAbC-4 from animal Rh.33172 (Wk38… · the same entry in another collection · chain C against C, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7L8S · PDBe 7L8S
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