Research workbench
BG505 sosip MD39 in complex with the polyclonal Fab pabc-4 from animal RH.33104 (WK26 time point)
Analyse BG505 sosip MD39 in complex with the polyclonal Fab pabc-4 from animal RH.33104… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7L8D
- Type
- protein
- Length
- 1,871 residues
- Chains
- 8
- Method
- electron microscopy
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Ligands
- NAG, MAN, BMA
Structure
electron microscopy · 8 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| H | — | protein | 107 | — | — |
| L | — | protein | 102 | — | — |
| A | — | protein | 432 | — | — |
| B | — | protein | 124 | — | — |
| C | — | protein | 434 | — | — |
| E | — | protein | 120 | — | — |
| D | — | protein | 433 | — | — |
| F | — | protein | 119 | — | — |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · 90 copies · chains A, B, C, D, F, E, H
- MAN · alpha-D-mannopyranose · sugar · 6 copies
- BMA · beta-D-mannopyranose · sugar · 4 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 7L8D · BG505 SOSIP MD39 in complex with the polyclonal Fab pAbC-4 from animal Rh.33104 (Wk26… · the same entry in another collection · chain H against H, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7L8D · PDBe 7L8D
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